The ectoparasitic mite, Varroa destructor , is a most important health risk for European honey bee subspecies (Apis mellifera ) globally. There is a scarcity in experimental approaches addressing this issue by using computed tomography. Our purpose was to determine the decrease in the volume, surface, density and weight alteration triggered by V. destructor in pre-imaginal stages of A. mellifera using computer-based 3-D reconstruction technology. Computer tomography used in the current study proved to be sufficiently sensitive for the detection of V. destructor in comb cells. This non-invasive experimental setup revealed that the developing worker pupae have retained their volume and surface values, whereas the weight loss triggered by V. destructor was statistically confirmed. In addition, the disappearance of lower radiodensity tissues is shown to be due to mite parasitism, which can be primarily explained by haemolymph losses.