Background and aims To provide insight into the patterns of soil organic matter decomposition, changes in the quantity of biopolymers and the correlation between them were followed using 2D correlation spectroscopy (2DCOS) FTIR. Methods Soil organic matter fractions with different vegetation/land use (grass, spruce, oak and arable) were examined in a 1-year laboratory incubation. The non-protected organic matter fraction was calculated in terms of particulate organic matter (POM), the carbon stabilized in aggregates as S + A (sand + aggregates), and the mineral-associated organic matter (MAOM) as the s + c (silt and clay) fraction. Results Forest soils (spruce, oak) exhibited high C and N accumulation in the POM fraction (48, 43% and 29, 22% for spruce and oak, respectively) due to the limited decomposition, caused by low pH and high soil C/N ratio. The 2DCOS analysis evealed that carbohydrate-protein and carbohydrate-lignin correlations could be observed most frequently during incubation. The carbohydrate-protein correlation was negative in all cases, for all fractions and for all vegetation types, which suggests biogeochemical linkage between these biopolymers. The temporal order of the spectral changes was widely varied for the vegetation types and especially for the SOM fractions. Lipid/ Lignin → Carbohydrate or Lipid → Lignin/Carboxyl/ Protein sequences were found for the protected carbon pools (S + A and s + c), possibly because of the readily available abundant N compounds present in MAOM. Conclusion Although lipids and lignin are considered as chemically stable materials that commonly remain constant during decomposition, these compounds were found to be very susceptible in all the fractions.